29 September 2025 to 1 October 2025
Martin Luther University Halle-Wittenberg
Europe/Berlin timezone

A Novel Tool for the Extraction of Plant Phenology from Digitized Herbarium Specimens

30 Sept 2025, 15:22
1m
Audimax (Audimax)

Audimax

Audimax

Poster Biodiversity Change Biodiversity Change

Speaker

Matthias Körschens (Friedrich Schiller University Jena)

Description

Herbarium specimens offer valuable insights into changes of plant distribution from the past to the present, aiding in predicting future developments and responses to environmental changes. Over centuries, herbarium specimens have been collected, labeled with data like date and place of collection, collector, species name and information on habitat, and archived manually, leading to gigantic collections of important historic information. However, extracting information relevant for research from such collections manually is a considerable challenge, which is why significant digitization efforts are taking place to enable faster processing. Unfortunately, while the amount and variety of data contained in such digitized herbarium specimens is large, automated methods to extract the information are still very limited.

We introduce a novel tool based on artificial neural networks to automatically extract phenological information from images of herbarium specimens. With this method, it will be possible to extract phenological information for large numbers of herbarium specimens without manual effort at high throughput and speed, which will enable further research on plant phenology from historical to present observations. Moreover, we develop the tool to be applicable to many different plant species without the need to supply own data or re-train the model on novel species. The system is developed in interdisciplinary cooperation between biologists and computer scientists.

Status Group Postdoctoral Researcher
Poster Presentation Option Yes, I’m willing to present as a poster.

Primary author

Matthias Körschens (Friedrich Schiller University Jena)

Co-authors

Franziska Bucher Dr Paul Bodesheim (Friedrich Schiller University Jena) Prof. Joachim Denzler (Friedrich Schiller University Jena) Christiane Ritz Christine Römermann (FSU Jena)

Presentation materials

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