29 September 2025 to 1 October 2025
Martin Luther University Halle-Wittenberg
Europe/Berlin timezone

Metabarcoding in biodiversity research – application spectrum and new methodological advances

Not scheduled
1h 30m
Audimax

Audimax

Workshop Workshop Workshop

Speaker

Martina Herrmann (Friedrich Schiller University Jena and German Center for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig)

Description

Metabarcoding is a versatile, powerful and widely used tool for the identification of taxonomic entities, uncovering hidden diversity, assessment of community composition in space and time, elucidating species interactions and food webs, and biodiversity changes. Last year, the Support Unit iBarc was established which provides direct access to metabarcoding services, starting from project planning via molecular lab support and services to downstream bioinformatics analysis, thereby covering a broad range of taxonomic groups from bacteria and fungi to insects and mammals. While these services are being offered as part of iBarc’s Support & Service Center, we also aim to foster communication and methodological and scientific exchange among the iDiv research groups using metabarcoding.
In the framework of the iDiv conference, we propose a 1.5-hours workshop to attract scientists outside our existing iBarc network to make metabarcoding an integral part of their research portfolio. The workshop will consist of two sessions: (1) Brief introduction to iBarc’s services and short presentations by members of the iBarc network, demonstrating how metabarcoding is currently being used in biodiversity research in the iDiv family; (2) Discussion on methodological advances such as the integration of different sequencing technologies, and new collaborative initiatives in breakout groups, followed by a summary of the breakout session results. Beyond the time span of the actual workshop, we will offer the opportunity of guided tours to the labs of Robert Paxton (insect metabarcoding) or the UFZ Halle (bacteria and fungi metabarcoding and sequencing facilities).
We cordially invite everybody interested in metabarcoding to learn more about our mission and services during this workshop!

Status Group Senior Scientist
Poster Presentation Option Undecided/No preference

Primary author

Martina Herrmann (Friedrich Schiller University Jena and German Center for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig)

Co-authors

Dinesh Sanka Loganatha Chetti (Friedrich Schiller University of Jena and German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig) María Méndez (German Center for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Martin Luther Univerity Halle-Wittenberg) Henrique Pereira (German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Martin Luther University Halle-Wittenberg) Martin Schlegel (University of Leipzig and German Center for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig) Luis Daniel Prada Salcedo (Helmholtz Center for Environmental Research (UFZ), Halle, and German Center for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig) Robert Paxton (Martin Luther University Halle-Wittenberg, German Centre for integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig) Stephanie Jurburg (UFZ Leipzig, German Center for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig) Martin Kaltenpoth (Max Planck Institute for Chemical Ecology, German Center for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig) Panagiotis Theodorou (Martin Luther University Halle-Wittenberg, German Centre for integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig) Aletta Bonn (German Center for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig and Friedrich Schiller University Jena) Roel van Klink (German Center for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig)

Presentation materials

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